Parameters

Iteration of Filtering	1
Mitochondrial Expression Threshold	5 %
Top High Quality Cell Filtered	1 %
Doublet Removed	Yes

               

Cell Stats

Estimated Number of High Quality Cell	6,779
High Quality Cell	9.22 %
Total UMI Counts in High Quality Cell	136,642,155
UMI Counts in High Quality Cell	66.92 %
Median UMI Counts per High Quality Cell	11,648
Median Genes per High Quality Cell	2,994
Total Genes Detected in High Quality Cell	24,854
Cell above Mitochondrial Expression Threshold	8.1 %
Estimated Doublet Rate in High Quality Cell	5.11 %

           

Sequencing Stats

Number of Reads Processed	385,741,789
Reads Pseudoaligned	88.9 %
Reads on Whitelist	94.66 %
Total UMI Counts	204,176,583
Sequencing Technology	10xv3
Species	Arabidopsis thaliana
Transcriptome	TAIR10

                     

Sample Stats

Sample	col0
Name	WT Col-0
Source	Benfey lab
Genotype	WT Col-0
Transgene	NA
Treatment	untreated
Age	5_day
Timepoint	NA
Rep	NA
Target Cells	5,000
Date	NA
Seq Run	NA