Analysis

Summary

col0 Summary

Processed by COPILOT

     

Parameters

Iteration of Filtering 1
Mitochondrial Expression Threshold 5 %
Top High Quality Cell Filtered 1 %
Doublet Removed Yes

               

Cell Stats

Estimated Number of High Quality Cell 6,779
High Quality Cell 9.22 %
Total UMI Counts in High Quality Cell 136,642,155
UMI Counts in High Quality Cell 66.92 %
Median UMI Counts per High Quality Cell 11,648
Median Genes per High Quality Cell 2,994
Total Genes Detected in High Quality Cell 24,854
Cell above Mitochondrial Expression Threshold 8.1 %
Estimated Doublet Rate in High Quality Cell 5.11 %

           

Sequencing Stats

Number of Reads Processed 385,741,789
Reads Pseudoaligned 88.9 %
Reads on Whitelist 94.66 %
Total UMI Counts 204,176,583
Sequencing Technology 10xv3
Species Arabidopsis thaliana
Transcriptome TAIR10

                     

Sample Stats

Sample col0
Name WT Col-0
Source Benfey lab
Genotype WT Col-0
Transgene NA
Treatment untreated
Age 5_day
Timepoint NA
Rep NA
Target Cells 5,000
Date NA
Seq Run NA